MRIQC: individual T1w report

Summary

  • BIDS filename: sub-3028_ses-1_T1w.
  • Date and time: 2022-10-31, 14:52.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.6508102511897149
cnr1.975671203606115
efc0.6316817273687363
fber1504.3316326530612
fwhmavg4.157936666666667
fwhmx4.10985
fwhmy4.62398
fwhmz3.73998
icvscsf0.20086421516952646
icvsgm0.41101414652226276
icvswm0.3881216383082108
inumed1.6707496643066406
inurange0.8417450666427613
qi10.0
qi20.0026297126233843057
rpvecsf27.857761451820856
rpvegm14.065029418276312
rpvewm17.992257340917337
sizex176
sizey256
sizez256
snrcsf3.3575733155045877
snrgm8.030159215874136
snrtotal10.297282352839797
snrwm19.50411452714067
snrdcsf36.45041885223616
snrdgm72.09071928978766
snrdtotal66.91414445009553
snrdwm92.20129520826278
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk3.970836268842307
summarybgmad7.1055008544563
summarybgmean16.24041727457484
summarybgmedian14.218009572476149
summarybgn2219512.0
summarybgp054.739336524158716
summarybgp9532.749347891658545
summarybgstdv8.930452410540115
summarycsfk0.7846034758421756
summarycsfmad118.42501424093832
summarycsfmean418.0524676580286
summarycsfmedian395.3352174758911
summarycsfn16081.0
summarycsfp05260.2375010512769
summarycsfp95631.0240203514695
summarycsfstdv117.74066807773336
summarygmk-0.08738192906627029
summarygmmad95.21371144971442
summarygmmean793.7928613863222
summarygmmedian781.884024541825
summarygmn13150.0
summarygmp05652.9101699180901
summarygmp95975.4805964564904
summarygmstdv97.36473132443419
summarywmk0.5797205436955872
summarywmmad46.73840562042366
summarywmmean1001.5347744365577
summarywmmedian1000.0000065974891
summarywmn202027.0
summarywmp05917.7805055491626
summarywmp951088.077114585787
summarywmstdv51.271106426603424
tpmoverlapcsf0.14860539138317108
tpmoverlapgm0.43234023451805115
tpmoverlapwm0.4847017228603363
wm2max0.5798314138388859
AcquisitionMatrixPE256
AcquisitionNumber1
AcquisitionTime11:58:42.132500
BaseResolution256
BodyPartExaminedBRAIN
CoilCombinationMethodAdaptive Combine
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20220720
Dcm2bidsVersion2.1.7
DeviceSerialNumber67034
DwellTime3e-06
EchoTime0.00169
FlipAngle7
ImageOrientationPatientDICOM[0.0273414, 0.996814, 0.0749269, -0.0352207, 0.075869, -0.996496]
ImageOrientationTextSag>Tra(2.1)>Cor(1.4)
ImageType['ORIGINAL', 'PRIMARY', 'OTHER', 'ND', 'NORM', 'MEAN']
ImagingFrequency123.259
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressFairbanks 710,Chicago ,Chicago,US,60611
InstitutionNameNU Tuna
InstitutionalDepartmentNameDepartment
InversionTime1.16
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
MatrixCoilModeGRAPPA
ModalityMR
NonlinearGradientCorrectionTrue
NumberOfAverages3
ParallelReductionFactorInPlane2
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingSteps191
PhaseResolution1
PixelBandwidth650
ProcedureStepDescriptionfMRI_STUDIES^MITTAL
ProtocolNametfl_epinav_ME3_1mm_p2
PulseSequenceDetails%CustomerSeq%\tfl_mgh_epinav_ABCD
ReceiveCoilActiveElementsHC1-7;NC1,2
ReceiveCoilNameHeadNeck_64
ReconMatrixPE256
RefLinesPE36
RepetitionTime2.17
SAR0.037866
ScanOptionsIR\PFP\WE
ScanningSequenceGR\IR
SequenceNametfl3d3_16ns
SequenceVariantSK\SP\MP
SeriesDescriptiontfl_epinav_ME3_1mm_p2 RMS
SeriesNumber8
ShimSetting[2597, 5435, -7534, -38, 78, -842, 214, -196]
SliceThickness1
SoftwareVersionssyngo MR E11
SpoilingStateTrue
StationNameMRC35427
TxRefAmp238.107
WipMemBlockPrisma_epi_moco_navigator_ABCD_tfl.prot
md5sumbcbbaef42c905a77bd868a41f566a485
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.